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CarotenoidsDB:
Chromatium warmingii Migula
carotenoids (Bacterial) reconstructed pathways in theory
(purple sulfur bacteria)
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Click here to see the carotenoid profile of Chromatium warmingii Migula
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Pathway reconstructed carotenoids:
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CA00083 (Rhodopinol)
CA00996 (Lycopenal)
CA00155 (Rhodopinal)
CA00177 (P 500)
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Pathway unconstructed carotenoids:
None
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Lycopene biosynthesis type:
Bacterial type (Ref.690)
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CA00043 (Lycopene)
biosynthesis pathway
Path:
CA00189
(Prephytoene pyrophosphate (diphosphate))
->
CA00060
(Phytoene)
->
CA00058
((all-E)-Phytofluene)
->
CA00051
(ζ-Carotene)
->
CA00047
(Neurosporene)
->
CA00043
(Lycopene)
See:
CB000005
(Bacterial and fungal pathway: CA00189 -> CA00060 -> CA00058 -> CA00051 -> CA00047 -> CA00043)
Necessary enzymes for those reactions in theory:
CrtB(2.5.1.32), CitPsy(2.5.1.32), AtPSY(2.5.1.32) (
CR00277
: CA00189 -> CA00060) --> Crtlb(1.3.99.28), CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.99.29), Crtla(1.3.99.29) (
CR00389
: CA00060 -> CA00058) --> CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.5.5, 1.3.99.29), Crtla(1.3.99.29) (
CR00115
: CA00058 -> CA00051) --> PDS(1.3.5.5, 1.3.99.29), CitPDS1(1.3.5.5), BoPDS(1.3.5.5), CrtI(1.3.5.6, 1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6) (
CR00136
: CA00051 -> CA00047) --> CrtI(1.3.5.6, 1.3.99.30, 1.3.99.31), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6), Crtlb(1.3.99.26) (
CR00132
: CA00047 -> CA00043)
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CA00083 (Rhodopinol)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00072
((13Z)-Lycopen-20-ol)
->
CA00083
(Rhodopinol)
See:
CB000043
(Knwon path in general: CA00043 -> CA00072), similar to
CB000014: CA00043 -> CA00073
(proposed reaction: CA00072 -> CA00083)
Necessary enzymes for those reactions in theory:
unknown (CA00043 -> CA00072) --> unknown (CA00072 -> CA00083)
☀
CA00996 (Lycopenal)
biosynthesis pathway
Path:
CA00060
(Phytoene)
->
CA00058
((all-E)-Phytofluene)
->
CA00051
(ζ-Carotene)
->
CA00047
(Neurosporene)
->
CA00043
(Lycopene)
->
CA00072
((13Z)-Lycopen-20-ol)
->
CA00996
(Lycopenal)
See:
CB000043
(Knwon path in general: CA00060 -> CA00058 -> CA00051 -> CA00047 -> CA00043 -> CA00072 -> CA00996)
Necessary enzymes for those reactions in theory:
Crtlb(1.3.99.28), CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.99.29), Crtla(1.3.99.29) (
CR00389
: CA00060 -> CA00058) --> CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.5.5, 1.3.99.29), Crtla(1.3.99.29) (
CR00115
: CA00058 -> CA00051) --> PDS(1.3.5.5, 1.3.99.29), CitPDS1(1.3.5.5), BoPDS(1.3.5.5), CrtI(1.3.5.6, 1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6) (
CR00136
: CA00051 -> CA00047) --> CrtI(1.3.5.6, 1.3.99.30, 1.3.99.31), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6), Crtlb(1.3.99.26) (
CR00132
: CA00047 -> CA00043) --> unknown (CA00043 -> CA00072) --> unknown (CA00072 -> CA00996)
☀
CA00155 (Rhodopinal)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00073
(Rhodopin)
->
CA00155
(Rhodopinal)
See:
CB000044
(Knwon path in Rhodoblastus: CA00043 -> CA00073 -> CA00155)
Necessary enzymes for those reactions in theory:
CrtC (
CR00229
: CA00043 -> CA00073) --> unknown (
CR00018
: CA00073 -> CA00155)
☀
CA00177 (P 500)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00073
(Rhodopin)
->
CA00133
(3,4-Dihydroanhydrorhodovibrin)
->
CA00142
(3',4'-Dihydrorhodovibrin)
->
CA00099
(3,4,3',4'-Tetrahydrospirilloxanthin)
->
CA00177
(P 500)
See:
CB000014
(Knwon path in bacterium: CA00043 -> CA00073),
CB000015
(Knwon path in bacterium: CA00073 -> CA00133),
CB000015
(Knwon path in bacterium: CA00133 -> CA00142),
CB000015
(Knwon path in bacterium: CA00142 -> CA00099), similar to
CB000044: CA00073 -> CA00155
(proposed reaction: CA00099 -> CA00177)
Necessary enzymes for those reactions in theory:
CrtC (
CR00229
: CA00043 -> CA00073) --> CrtF (
CR00330
: CA00073 -> CA00133) --> CrtC (
CR00351
: CA00133 -> CA00142) --> CrtF (
CR00331
: CA00142 -> CA00099) --> unknown (CA00099 -> CA00177)
Ref.690 : Enfissi EM, Nogueira M, Bramley PM, Fraser PD, Plant J. 2017 Feb;89(4):774-788. doi: 10.1111/tpj.13428. Epub 2017 Feb 7., "The regulation of carotenoid formation in tomato fruit.", PMID: 27865019 DOI: 10.1111/tpj.13428
Since June 15th, 2015 by Junko Yabuzaki.
