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CarotenoidsDB:
Halophilic coccus strain SE20-4
carotenoids (Bacterial) reconstructed pathways in theory
   
(Firmicutes - Bacilli, same as Planococcus halophilus (Ref.615) and Marinococcus halophilus)
   
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Click here to see the carotenoid profile of Halophilic coccus strain SE20-4
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Pathway reconstructed carotenoids:
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CA00030 (1-(D-Mannosyloxy)-3,4-didenhydro-1,2-dihydro-8'-apolycopen-8'-oic acid)
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Pathway unconstructed carotenoids:
None
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Lycopene biosynthesis type:
Bacterial type (Diapolycopene)
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CA00001 (4,4'-Diapolycopene)
biosynthesis pathway
Path:
CA00008
(4,4'-Diapophytoene)
->
CA00007
(4,4'-Diapophytofluene)
->
CA00006
(4,4'-Diapo-ζ-carotene)
->
CA00002
(4,4'-Diaponeurosporene)
->
CA00001
(4,4'-Diapolycopene)
See:
CB000001
(Knwon path in bacterium: CA00008 -> CA00007 -> CA00006 -> CA00002 -> CA00001)
Necessary enzymes for those reactions in theory:
unknown (
CR00272
: CA00008 -> CA00007) --> unknown (
CR00116
: CA00007 -> CA00006) --> unknown (
CR00133
: CA00006 -> CA00002) --> CrtN(1.3.8.2) (
CR00137
: CA00002 -> CA00001)
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CA00030 (1-(D-Mannosyloxy)-3,4-didenhydro-1,2-dihydro-8'-apolycopen-8'-oic acid)
biosynthesis pathway
Path:
CA00008
(4,4'-Diapophytoene)
->
CA00007
(4,4'-Diapophytofluene)
->
CA00006
(4,4'-Diapo-ζ-carotene)
->
CA00002
(4,4'-Diaponeurosporene)
->
CA00001
(4,4'-Diapolycopene)
->
CA01009
(Hydroxy-3,4-dehydro-apo-8'-lycopene)
->
CA01008
(Methyl hydroxy-3,4-dehydro-apo-8'-lycopenoate)
->
CA00030
(1-(D-Mannosyloxy)-3,4-didenhydro-1,2-dihydro-8'-apolycopen-8'-oic acid)
See:
CB000001
(Knwon path in bacterium: CA00008 -> CA00007),
CB000001
(Knwon path in bacterium: CA00007 -> CA00006),
CB000001
(Knwon path in bacterium: CA00006 -> CA00002),
CB000001
(Knwon path in bacterium: CA00002 -> CA00001),
CB000102
(Knwon path in Halobacillus: CA00001 -> CA01009), Proposed reaction (CA01009 -> CA01008), Proposed reaction (CA01008 -> CA00030)
Necessary enzymes for those reactions in theory:
unknown (
CR00272
: CA00008 -> CA00007) --> unknown (
CR00116
: CA00007 -> CA00006) --> unknown (
CR00133
: CA00006 -> CA00002) --> CrtN(1.3.8.2) (
CR00137
: CA00002 -> CA00001) --> unknown (CA00001 -> CA01009) --> unknown (CA01009 -> CA01008) --> unknown (CA01008 -> CA00030)
Ref.615 : T. J. NOVITSKY1 AND D. J. KUSHNER, INTERNATIONAL JOURNAL OFSYSTEMATIC BACTERIOLOGY, Vol. 26, No.1, Jan. 1976, p. 53-57, "Planococcus halophilus sp. nov., a Facultatively Halophilic coccus"
Since June 15th, 2015 by Junko Yabuzaki.