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CarotenoidsDB:
Halorubrum chaoviator Halo-G
carotenoids (Archaeal) reconstructed pathways in theory
(Archaea: Euryarchaeota)
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Click here to see the carotenoid profile of Halorubrum chaoviator Halo-G
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Pathway reconstructed carotenoids:
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CA00043 (Lycopene)
CA00309 (β-Carotene)
CA00923 (Bacterioruberin)
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Pathway unconstructed carotenoids:
None
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Lycopene biosynthesis type:
Bacterial type (Ref.690)
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CA00043 (Lycopene)
biosynthesis pathway
Path:
CA00189
(Prephytoene pyrophosphate (diphosphate))
->
CA00060
(Phytoene)
->
CA00058
((all-E)-Phytofluene)
->
CA00051
(ζ-Carotene)
->
CA00047
(Neurosporene)
->
CA00043
(Lycopene)
See:
CB000005
(Bacterial and fungal pathway: CA00189 -> CA00060 -> CA00058 -> CA00051 -> CA00047 -> CA00043)
Necessary enzymes for those reactions in theory:
CrtB(2.5.1.32), CitPsy(2.5.1.32), AtPSY(2.5.1.32) (
CR00277
: CA00189 -> CA00060) --> Crtlb(1.3.99.28), CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.99.29), Crtla(1.3.99.29) (
CR00389
: CA00060 -> CA00058) --> CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.5.5, 1.3.99.29), Crtla(1.3.99.29) (
CR00115
: CA00058 -> CA00051) --> PDS(1.3.5.5, 1.3.99.29), CitPDS1(1.3.5.5), BoPDS(1.3.5.5), CrtI(1.3.5.6, 1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6) (
CR00136
: CA00051 -> CA00047) --> CrtI(1.3.5.6, 1.3.99.30, 1.3.99.31), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6), Crtlb(1.3.99.26) (
CR00132
: CA00047 -> CA00043)
☀
CA00309 (β-Carotene)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00191
(γ-Carotene)
->
CA00309
(β-Carotene)
See:
CB000081
(Knwon path in general: CA00043 -> CA00191 -> CA00309)
Necessary enzymes for those reactions in theory:
CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (
CR00374
: CA00043 -> CA00191) --> CrtL(5.5.1.19), CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P, AL2, PSY(2.5.1.32) (
CR00365
: CA00191 -> CA00309)
☀
CA00923 (Bacterioruberin)
biosynthesis pathway
Path:
CA00060
(Phytoene)
->
CA00058
((all-E)-Phytofluene)
->
CA00051
(ζ-Carotene)
->
CA00047
(Neurosporene)
->
CA00043
(Lycopene)
->
CA01163
(Dihydroisopentenyldehydrorhodopin)
->
CA00907
(2-Isopentenyl-3,4-dehydrorhodopin)
->
CA01194
(Dihydrobisanhydrobacterioruberin)
->
CA00916
(Bisanhydrobacterioruberin)
->
CA00919
(Monoanhydrobacterioruberin)
->
CA00923
(Bacterioruberin)
See:
CB000097
(Bacterial pathway: CA00060 -> CA00058 -> CA00051 -> CA00047 -> CA00043 -> CA01163 -> CA00907 -> CA01194 -> CA00916 -> CA00919 -> CA00923)
Necessary enzymes for those reactions in theory:
Crtlb(1.3.99.28), CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.99.29), Crtla(1.3.99.29) (
CR00389
: CA00060 -> CA00058) --> CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.5.5, 1.3.99.29), Crtla(1.3.99.29) (
CR00115
: CA00058 -> CA00051) --> PDS(1.3.5.5, 1.3.99.29), CitPDS1(1.3.5.5), BoPDS(1.3.5.5), CrtI(1.3.5.6, 1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6) (
CR00136
: CA00051 -> CA00047) --> CrtI(1.3.5.6, 1.3.99.30, 1.3.99.31), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6), Crtlb(1.3.99.26) (
CR00132
: CA00047 -> CA00043) --> LyeJ, C0506 (
CR00320
: CA00043 -> CA01163) --> CrtD, C0507 (
CR00126
: CA01163 -> CA00907) --> LyeJ, C0506 (
CR00323
: CA00907 -> CA01194) --> CrtD, C0507 (
CR00131
: CA01194 -> CA00916) --> CruF, C0505 (
CR00209
: CA00916 -> CA00919) --> CruF, C0505 (
CR00210
: CA00919 -> CA00923)
Ref.690 : Enfissi EM, Nogueira M, Bramley PM, Fraser PD, Plant J. 2017 Feb;89(4):774-788. doi: 10.1111/tpj.13428. Epub 2017 Feb 7., "The regulation of carotenoid formation in tomato fruit.", PMID: 27865019 DOI: 10.1111/tpj.13428
Since June 15th, 2015 by Junko Yabuzaki.
