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CarotenoidsDB:
Sorangium compositum
carotenoids (Bacterial) reconstructed pathways in theory
(Deltaproteobacteria: myxobacterium)
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Click here to see the carotenoid profile of Sorangium compositum
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Pathway reconstructed carotenoids:
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CA00043 (Lycopene)
CA00047 (Neurosporene)
CA00191 (γ-Carotene)
CA00190 (Torulene)
CA00193 (1',2'-Dihydro-γ-carotene)
CA00238 (1',2'-Dihydro-1'-hydroxytorulene rhamnoside)
CA00239 (1',2'-Dihydro-1'-hydroxytorulene glucoside)
CA00214 (Saproxanthin rhamnoside)
CA00240 (1',2'-Dihydro-3,1'-dihydroxytorulene glucoside)
☀
Pathway unconstructed carotenoids:
None
☀
Lycopene biosynthesis type:
Bacterial type (Ref.690)
☀
CA00043 (Lycopene)
biosynthesis pathway
Path:
CA00189
(Prephytoene pyrophosphate (diphosphate))
->
CA00060
(Phytoene)
->
CA00058
((all-E)-Phytofluene)
->
CA00051
(ζ-Carotene)
->
CA00047
(Neurosporene)
->
CA00043
(Lycopene)
See:
CB000005
(Bacterial and fungal pathway: CA00189 -> CA00060 -> CA00058 -> CA00051 -> CA00047 -> CA00043)
Necessary enzymes for those reactions in theory:
CrtB(2.5.1.32), CitPsy(2.5.1.32), AtPSY(2.5.1.32) (
CR00277
: CA00189 -> CA00060) --> Crtlb(1.3.99.28), CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.99.29), Crtla(1.3.99.29) (
CR00389
: CA00060 -> CA00058) --> CrtI(1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), PDS(1.3.5.5, 1.3.99.29), Crtla(1.3.99.29) (
CR00115
: CA00058 -> CA00051) --> PDS(1.3.5.5, 1.3.99.29), CitPDS1(1.3.5.5), BoPDS(1.3.5.5), CrtI(1.3.5.6, 1.3.99.28, 1.3.99.30, 1.3.99.31), Crtlb(1.3.99.28), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6) (
CR00136
: CA00051 -> CA00047) --> CrtI(1.3.5.6, 1.3.99.30, 1.3.99.31), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6), Crtlb(1.3.99.26) (
CR00132
: CA00047 -> CA00043)
☀
CA00190 (Torulene)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00042
(3,4-Dehydrolycopene)
->
CA00190
(Torulene)
See:
CB000078
(Knwon path in mold: CA00043 -> CA00042 -> CA00190)
Necessary enzymes for those reactions in theory:
CrtI (
CR00119
: CA00043 -> CA00042) --> AL2 (
CR00370
: CA00042 -> CA00190)
☀
CA00193 (1',2'-Dihydro-γ-carotene)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00191
(γ-Carotene)
->
CA00193
(1',2'-Dihydro-γ-carotene)
See:
CB000007
(Knwon path in general: CA00043 -> CA00191), Proposed reaction (CA00191 -> CA00193)
Necessary enzymes for those reactions in theory:
CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (
CR00374
: CA00043 -> CA00191) --> unknown (CA00191 -> CA00193)
☀
CA00238 (1',2'-Dihydro-1'-hydroxytorulene rhamnoside)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00191
(γ-Carotene)
->
CA00202
(1'-Hydroxy-γ-carotene)
->
CA00217
(1'-Hydroxytorulene)
->
CA00238
(1',2'-Dihydro-1'-hydroxytorulene rhamnoside)
See:
CB000007
(Knwon path in general: CA00043 -> CA00191),
CB000024
(Knwon path in purple bacterium: CA00191 -> CA00202),
CB000024
(Knwon path in purple bacterium: CA00202 -> CA00217), Proposed reaction (CA00217 -> CA00238)
Necessary enzymes for those reactions in theory:
CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (
CR00374
: CA00043 -> CA00191) --> CrtC (
CR00344
: CA00191 -> CA00202) --> unknown (
CR00113
: CA00202 -> CA00217) --> unknown (CA00217 -> CA00238)
☀
CA00239 (1',2'-Dihydro-1'-hydroxytorulene glucoside)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00191
(γ-Carotene)
->
CA00202
(1'-Hydroxy-γ-carotene)
->
CA00217
(1'-Hydroxytorulene)
->
CA00239
(1',2'-Dihydro-1'-hydroxytorulene glucoside)
See:
CB000007
(Knwon path in general: CA00043 -> CA00191),
CB000024
(Knwon path in purple bacterium: CA00191 -> CA00202),
CB000024
(Knwon path in purple bacterium: CA00202 -> CA00217), Proposed reaction (CA00217 -> CA00239)
Necessary enzymes for those reactions in theory:
CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (
CR00374
: CA00043 -> CA00191) --> CrtC (
CR00344
: CA00191 -> CA00202) --> unknown (
CR00113
: CA00202 -> CA00217) --> unknown (CA00217 -> CA00239)
☀
CA00214 (Saproxanthin rhamnoside)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00191
(γ-Carotene)
->
CA00202
(1'-Hydroxy-γ-carotene)
->
CA00217
(1'-Hydroxytorulene)
->
CA00205
(Saproxanthin)
->
CA00214
(Saproxanthin rhamnoside)
See:
CB000007
(Knwon path in general: CA00043 -> CA00191),
CB000024
(Knwon path in purple bacterium: CA00191 -> CA00202),
CB000024
(Knwon path in purple bacterium: CA00202 -> CA00217),
CB000153
(CA00217 -> CA00205), Proposed reaction (CA00205 -> CA00214)
Necessary enzymes for those reactions in theory:
CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (
CR00374
: CA00043 -> CA00191) --> CrtC (
CR00344
: CA00191 -> CA00202) --> unknown (
CR00113
: CA00202 -> CA00217) --> unknown (CA00217 -> CA00205) --> unknown (CA00205 -> CA00214)
☀
CA00240 (1',2'-Dihydro-3,1'-dihydroxytorulene glucoside)
biosynthesis pathway
Path:
CA00043
(Lycopene)
->
CA00191
(γ-Carotene)
->
CA00202
(1'-Hydroxy-γ-carotene)
->
CA00217
(1'-Hydroxytorulene)
->
CA00205
(Saproxanthin)
->
CA00240
(1',2'-Dihydro-3,1'-dihydroxytorulene glucoside)
See:
CB000007
(Knwon path in general: CA00043 -> CA00191),
CB000024
(Knwon path in purple bacterium: CA00191 -> CA00202),
CB000024
(Knwon path in purple bacterium: CA00202 -> CA00217),
CB000153
(CA00217 -> CA00205), Proposed reaction (CA00205 -> CA00240)
Necessary enzymes for those reactions in theory:
CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (
CR00374
: CA00043 -> CA00191) --> CrtC (
CR00344
: CA00191 -> CA00202) --> unknown (
CR00113
: CA00202 -> CA00217) --> unknown (CA00217 -> CA00205) --> unknown (CA00205 -> CA00240)
Ref.690 : Enfissi EM, Nogueira M, Bramley PM, Fraser PD, Plant J. 2017 Feb;89(4):774-788. doi: 10.1111/tpj.13428. Epub 2017 Feb 7., "The regulation of carotenoid formation in tomato fruit.", PMID: 27865019 DOI: 10.1111/tpj.13428
Since June 15th, 2015 by Junko Yabuzaki.
