Carotenoid DB: Solanum lycopersicum carotenoids (Eukaryote) reconstructed pathways in theory

All carotenoids     All organisms     All pathways     All reactions     Feedback CarotenoidsDB: Solanum lycopersicum carotenoids (Eukaryote) reconstructed pathways in theory
                            (Land plant: Solanaceae: tomato, same as Lycopersicon esculentum)
                                 ☀ Click here to see the carotenoid profile of Solanum lycopersicum

☀ Pathway reconstructed carotenoids: [ Search similar carotenogenesis pathway constructing organisms ]

CA00044 (Prolycopene)

CA00060 (Phytoene)

CA00066 ((7Z,9Z,9'Z)-Neurosporene)

CA00071 (Lycoxanthin)

CA00983 ((2S,5R,6R)-1,16-didehydro- 2,6-cyclolycopene-5-ol)

CA00131 (Phytofluenol)

CA01053 ((2S,5S,6R)-1,16-didehydro-2,6-cyclolycopene-5-ol)

CA01056 ((2R,5R,6R)-2,6-cyclolycopene-1,5-diol)

CA00984 ((2S,5S,6R)-2,6-cyclolycopene-1-methoxy-5-ol)

CA00150 (Lycopene 5,6-epoxide)

CA00147 (ζ-Carotene epoxide)

CA00151 (Phytofluene epoxide)

CA00148 (Phytoene epoxide)

CA00302 (3-Hydroxy-δ-carotene)

CA00397 (Mutatochrome)

CA00678 (Anhydrolutein I)

CA00790 (Apo-6'-lycopenal)

CA00789 (Apo-8'-lycopenal)

CA01148 (Apo-10'-lycopenal)

CA01219 (Apo-12'-lycopenal)

CA01220 (Apo-14'-lycopenal)

CA01010 (Geranylacetone)

CA01013 (Pseudoionone)

CA01055 ((2S,5S,6R)-plinol)

CA01011 (6-methyl-5-hepten-2-one)

CA00803 (β-Ionone)

CA00800 (β-Damascenone)

☀ Pathway unconstructed carotenoids: CA00983 ((2S,5R,6R)-1,16-didehydro- 2,6-cyclolycopene-5-ol), CA01053 ((2S,5S,6R)-1,16-didehydro-2,6-cyclolycopene-5-ol), CA01056 ((2R,5R,6R)-2,6-cyclolycopene-1,5-diol), CA00984 ((2S,5S,6R)-2,6-cyclolycopene-1-methoxy-5-ol), CA01010 (Geranylacetone), CA01055 ((2S,5S,6R)-plinol), CA01011 (6-methyl-5-hepten-2-one)
☀ Lycopene biosynthesis type: Plant type (Ref.690)

  ☀ CA00043 (Lycopene) biosynthesis pathway

   Path: CA00189 (Prephytoene pyrophosphate (diphosphate)) -> CA00060 (Phytoene) -> CA00059 ((9Z,15Z)-Phytofluene) -> CA00053 ((9Z,15Z,9'Z)-ζ-Carotene) -> CA00065 ((9Z,9'Z)-ζ-Carotene) -> CA00066 ((7Z,9Z,9'Z)-Neurosporene) -> CA00044 (Prolycopene) -> CA00043 (Lycopene)

   See: CB000004 (Cyanobacterial and higher plant pathay: CA00189 -> CA00060 -> CA00059 -> CA00053 -> CA00065 -> CA00066 -> CA00044 -> CA00043)

   Necessary enzymes for those reactions in theory: CrtB(2.5.1.32), CitPsy(2.5.1.32), AtPSY(2.5.1.32) (CR00277: CA00189 -> CA00060) --> PDS(1.3.5.5) (CR00015: CA00060 -> CA00059) --> PDS(1.3.5.5) (CR00016: CA00059 -> CA00053) --> Z-ISO(5.2.1.12) (CR00390: CA00053 -> CA00065) --> CrtI(1.3.5.6), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6) (CR00011: CA00065 -> CA00066) --> CrtI(1.3.5.6), CrtQa(1.3.5.6), CrtQb(1.3.5.6), ZDS(1.3.5.6) (CR00012: CA00066 -> CA00044) --> CRTISO(5.2.1.13) (CR00391: CA00044 -> CA00043)

  ☀ CA00051 (ζ-Carotene) biosynthesis pathway

   Path: CA00060 (Phytoene) -> CA00059 ((9Z,15Z)-Phytofluene) -> CA00053 ((9Z,15Z,9'Z)-ζ-Carotene) -> CA00065 ((9Z,9'Z)-ζ-Carotene) -> CA00051 (ζ-Carotene)

   See: CB000004 (Cyanobacterial and higher plant pathay: CA00060 -> CA00059), CB000004 (Cyanobacterial and higher plant pathay: CA00059 -> CA00053), CB000004 (Cyanobacterial and higher plant pathay: CA00053 -> CA00065), CR00460 (CA00065 -> CA00051)

   Necessary enzymes for those reactions in theory: PDS(1.3.5.5) (CR00015: CA00060 -> CA00059) --> PDS(1.3.5.5) (CR00016: CA00059 -> CA00053) --> Z-ISO(5.2.1.12) (CR00390: CA00053 -> CA00065) --> unknown (CR00460: CA00065 -> CA00051)

  ☀ CA00147 (ζ-Carotene epoxide) biosynthesis pathway

   Path: CA00060 (Phytoene) -> CA00059 ((9Z,15Z)-Phytofluene) -> CA00053 ((9Z,15Z,9'Z)-ζ-Carotene) -> CA00065 ((9Z,9'Z)-ζ-Carotene) -> CA00051 (ζ-Carotene) -> CA00147 (ζ-Carotene epoxide)

   See: CB000004 (Cyanobacterial and higher plant pathay: CA00060 -> CA00059), CB000004 (Cyanobacterial and higher plant pathay: CA00059 -> CA00053), CB000004 (Cyanobacterial and higher plant pathay: CA00053 -> CA00065), CR00460 (CA00065 -> CA00051), Proposed reaction (CA00051 -> CA00147)

   Necessary enzymes for those reactions in theory: PDS(1.3.5.5) (CR00015: CA00060 -> CA00059) --> PDS(1.3.5.5) (CR00016: CA00059 -> CA00053) --> Z-ISO(5.2.1.12) (CR00390: CA00053 -> CA00065) --> unknown (CR00460: CA00065 -> CA00051) --> unknown (CA00051 -> CA00147)

  ☀ CA00151 (Phytofluene epoxide) biosynthesis pathway

   Path: CA00060 (Phytoene) -> CA00059 ((9Z,15Z)-Phytofluene) -> CA00058 ((all-E)-Phytofluene) -> CA00151 (Phytofluene epoxide)

   See: CB000004 (Cyanobacterial and higher plant pathay: CA00060 -> CA00059), Proposed reaction (CA00059 -> CA00058), Proposed reaction (CA00058 -> CA00151)

   Necessary enzymes for those reactions in theory: PDS(1.3.5.5) (CR00015: CA00060 -> CA00059) --> unknown (CA00059 -> CA00058) --> unknown (CA00058 -> CA00151)

  ☀ CA00148 (Phytoene epoxide) biosynthesis pathway

   Path: CA00060 (Phytoene) -> CA00061 ((all-E)-Phytoene) -> CA00148 (Phytoene epoxide)

   See: Proposed reaction (CA00060 -> CA00061), Proposed reaction (CA00061 -> CA00148)

   Necessary enzymes for those reactions in theory: unknown (CA00060 -> CA00061) --> unknown (CA00061 -> CA00148)

  ☀ CA00131 (Phytofluenol) biosynthesis pathway

   Path: CA00060 (Phytoene) -> CA00059 ((9Z,15Z)-Phytofluene) -> CA00058 ((all-E)-Phytofluene) -> CA00131 (Phytofluenol)

   See: CB000004 (Cyanobacterial and higher plant pathay: CA00060 -> CA00059), Proposed reaction (CA00059 -> CA00058), Proposed reaction (CA00058 -> CA00131)

   Necessary enzymes for those reactions in theory: PDS(1.3.5.5) (CR00015: CA00060 -> CA00059) --> unknown (CA00059 -> CA00058) --> unknown (CA00058 -> CA00131)

  ☀ CA00800 (β-Damascenone) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00191 (γ-Carotene) -> CA00309 (β-Carotene) -> CA00322 (β-Cryptoxanthin) -> CA00328 (Zeaxanthin) -> CA00407 (Antheraxanthin) -> CA00416 (Violaxanthin) -> CA00414 (Neoxanthin) -> CA01012 (Grasshopper ketone) -> CA01018 (Annuionone G) -> CA00804 (3-Hydroxy-β-damascone) -> CA00800 (β-Damascenone)

   See: CB000007 (Knwon path in general: CA00043 -> CA00191), CB000009 (Knwon path in general: CA00191 -> CA00309), CB000028 (Knwon path in general: CA00309 -> CA00322), CB000028 (Knwon path in general: CA00322 -> CA00328), CB000038 (Algal and higher plant pathway (probably eukaryotic): CA00328 -> CA00407), CB000038 (Algal and higher plant pathway (probably eukaryotic): CA00407 -> CA00416), CB000040 (Knwon path in general: CA00416 -> CA00414), CB000124 (Knwon path in wine and tea: CA00414 -> CA01012), CB000124 (Knwon path in wine and tea: CA01012 -> CA01018), CB000124 (Knwon path in wine and tea: CA01018 -> CA00804), CB000124 (Knwon path in wine and tea: CA00804 -> CA00800)

   Necessary enzymes for those reactions in theory: CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (CR00374: CA00043 -> CA00191) --> CrtL(5.5.1.19), CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P, AL2, PSY(2.5.1.32) (CR00365: CA00191 -> CA00309) --> CrtR(1.14.13.129), CrtZ(1.14.13.129), LUT5(1.14.13.129), BCH(1.14.13.129) (CR00192: CA00309 -> CA00322) --> CrtR(1.14.13.129), CrtZ(1.14.13.129), LUT5(1.14.13.129), BCH(1.14.13.129) (CR00190: CA00322 -> CA00328) --> ZEP(1.14.13.90) (CR00158: CA00328 -> CA00407) --> ZEP(1.14.13.90) (CR00159: CA00407 -> CA00416) --> ABA4(5.3.99.9), NSY(5.3.99.9), NXS(5.3.99.9) (CR00382: CA00416 -> CA00414) --> RdCCD1 (CR00088: CA00414 -> CA01012) --> unknown (CA01012 -> CA01018) --> unknown (CA01018 -> CA00804) --> unknown (CA00804 -> CA00800)

  ☀ CA00071 (Lycoxanthin) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00071 (Lycoxanthin)

   See: Proposed reaction (CA00043 -> CA00071)

   Necessary enzymes for those reactions in theory: unknown (CA00043 -> CA00071)

  ☀ CA00150 (Lycopene 5,6-epoxide) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00150 (Lycopene 5,6-epoxide)

   See: Proposed reaction (CA00043 -> CA00150)

   Necessary enzymes for those reactions in theory: unknown (CA00043 -> CA00150)

  ☀ CA00397 (Mutatochrome) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00191 (γ-Carotene) -> CA00309 (β-Carotene) -> CA00396 (β-Carotene 5,6-epoxide) -> CA00397 (Mutatochrome)

   See: CB000007 (Knwon path in general: CA00043 -> CA00191), CB000009 (Knwon path in general: CA00191 -> CA00309), CR00157 (CA00309 -> CA00396), CR00162 (CA00396 -> CA00397)

   Necessary enzymes for those reactions in theory: CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (CR00374: CA00043 -> CA00191) --> CrtL(5.5.1.19), CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P, AL2, PSY(2.5.1.32) (CR00365: CA00191 -> CA00309) --> unknown (CR00157: CA00309 -> CA00396) --> unknown (CR00162: CA00396 -> CA00397)

  ☀ CA00790 (Apo-6'-lycopenal) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00790 (Apo-6'-lycopenal)

   See: CR00438 (CA00043 -> CA00790)

   Necessary enzymes for those reactions in theory: Autooxidation (probably non-enzymatic) (CR00438: CA00043 -> CA00790)

  ☀ CA00789 (Apo-8'-lycopenal) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00789 (Apo-8'-lycopenal)

   See: CR00437 (CA00043 -> CA00789)

   Necessary enzymes for those reactions in theory: Autooxidation (probably non-enzymatic) (CR00437: CA00043 -> CA00789)

  ☀ CA01148 (Apo-10'-lycopenal) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA01148 (Apo-10'-lycopenal)

   See: CR00436 (CA00043 -> CA01148)

   Necessary enzymes for those reactions in theory: Autooxidation (probably non-enzymatic) (CR00436: CA00043 -> CA01148)

  ☀ CA01219 (Apo-12'-lycopenal) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA01219 (Apo-12'-lycopenal)

   See: CR00439 (CA00043 -> CA01219)

   Necessary enzymes for those reactions in theory: Autooxidation (probably non-enzymatic) (CR00439: CA00043 -> CA01219)

  ☀ CA01220 (Apo-14'-lycopenal) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA01220 (Apo-14'-lycopenal)

   See: CR00440 (CA00043 -> CA01220)

   Necessary enzymes for those reactions in theory: Autooxidation (probably non-enzymatic) (CR00440: CA00043 -> CA01220)

  ☀ CA00302 (3-Hydroxy-δ-carotene) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00298 (δ-Carotene) -> CA00302 (3-Hydroxy-δ-carotene)

   See: CB000010 (Knwon path in general: CA00043 -> CA00298), Proposed reaction (CA00298 -> CA00302)

   Necessary enzymes for those reactions in theory: CrtL-e(5.5.1.18), LCYe(5.5.1.18) (CR00377: CA00043 -> CA00298) --> unknown (CA00298 -> CA00302)

  ☀ CA00678 (Anhydrolutein I) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00191 (γ-Carotene) -> CA00677 (β,γ-Carotene) -> CA00678 (Anhydrolutein I)

   See: CB000007 (Knwon path in general: CA00043 -> CA00191), Proposed reaction (CA00191 -> CA00677), Proposed reaction (CA00677 -> CA00678)

   Necessary enzymes for those reactions in theory: CrtY(5.5.1.19), CrtL-b(5.5.1.19), CruA/P(5.5.1.19), AL2(5.5.1.19) (CR00374: CA00043 -> CA00191) --> unknown (CA00191 -> CA00677) --> unknown (CA00677 -> CA00678)

  ☀ CA01013 (Pseudoionone) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA01013 (Pseudoionone)

   See: CR00098 (CA00043 -> CA01013)

   Necessary enzymes for those reactions in theory: unknown (CR00098: CA00043 -> CA01013)

  ☀ CA00803 (β-Ionone) biosynthesis pathway

   Path: CA00309 (β-Carotene) -> CA00311 ((9Z)-β-Carotene) -> CA00803 (β-Ionone)

   See: CB000086 (Knwon path in general: CA00309 -> CA00311 -> CA00803)

   Necessary enzymes for those reactions in theory: DWARF27 (CR00357: CA00309 -> CA00311) --> CCD7, MAX3, D17/HTD1, RMS5, DAD1, NCED7 (CR00082: CA00311 -> CA00803)

  ☀ CA01013 (Pseudoionone) biosynthesis pathway

   Path: CA00043 (Lycopene) -> CA00298 (δ-Carotene) -> CA01013 (Pseudoionone)

   See: CB000010 (Knwon path in general: CA00043 -> CA00298), CR00096 (CA00298 -> CA01013)

   Necessary enzymes for those reactions in theory: CrtL-e(5.5.1.18), LCYe(5.5.1.18) (CR00377: CA00043 -> CA00298) --> unknown (CR00096: CA00298 -> CA01013)

Ref.690 : Enfissi EM, Nogueira M, Bramley PM, Fraser PD, Plant J. 2017 Feb;89(4):774-788. doi: 10.1111/tpj.13428. Epub 2017 Feb 7., "The regulation of carotenoid formation in tomato fruit.", PMID: 27865019 DOI: 10.1111/tpj.13428

Since June 15th, 2015 by Junko Yabuzaki.